Hydra-genetics

We are an organization/community with the goal of making snakemake pipeline development easier, faster, a bit more structured and of higher quality.

We do this by providing snakemake modules that can be combined to create a complete analysis or included in already existing pipelines. All modules are subjected to extensive testing to make sure that new releases doesn't unexpectedly break existing pipeline or deviate from guidelines and best practices on how to write code.

qc module

The qc module is a collection of qc programs that performs analysis on the aligned bam-files as well as fastq-files and then collects these qc-measures in a html-report with MultiQC.